Welcome to Bacdiving’s documentation!

Bacdiving is a Python package which can access and retrieve information from the world’s largest database for standardized bacterial phenotypic information: BacDive. Additionally, Bacdiving provides access statistics and several options to visualize the retrieved this information.

Check out the Installation section on how to install this package as well as the Usage and Tutorial section for further information on how to use the package.

Indices and tables

• Index

• Module Index

• Search Page

Contents

• Installation
• Usage
  • About Bacdiving
  • Accessing BacDive
    • bacdiving.bacdive_call()
    • bacdiving.get_resulting_df_values()
    • bacdiving.access_list_df_objects()
  • Visualizations
    • bacdiving.overview_treeplot()
    • bacdiving.circular_treeplot()
    • bacdiving.stacked_barplot_relative_abundance()
    • bacdiving.pieplot_maker()
    • bacdiving.worldmap_maker()
    • bacdiving.fatty_acid_profile()
    • bacdiving.freqplot_maker()
    • bacdiving.boxplot_maker()
    • bacdiving.barplot_maker()
• Tutorial